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trmA protein (Pasteurella multocida) - STRING interaction network
"trmA" - tRNA in Pasteurella multocida
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmAtRNA (uracil(54)-C(5))-methyltransferase; Dual-specificity methyltransferase that catalyzes the formation of 5-methyluridine at position 54 (m5U54) in all tRNAs, and that of position 341 (m5U341) in tmRNA (transfer-mRNA) (362 aa)    
Predicted Functional Partners:
DR93_132
annotation not available (252 aa)
 
        0.890
sun
rsmB- ribosomal RNA small subunit methyltransferase B (446 aa)
   
 
  0.612
trmB
annotation not available (234 aa)
   
   
  0.587
DR93_134
Uncharacterized protein (109 aa)
              0.585
truD
annotation not available (335 aa)
     
 
  0.579
tmcA
annotation not available (651 aa)
     
        0.542
DR93_2019
annotation not available (36 aa)
 
        0.532
guaA
guaA_Nterm- GMP synthase (glutamine-hydrolyzing), N-terminal domain (523 aa)
   
   
  0.500
dsbA
DsbA; Thiol-disulfide interchange protein DsbA (206 aa)
         
  0.476
yihD
annotation not available (88 aa)
              0.467
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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