STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
canCarbonic anhydrase; Reversible hydration of carbon dioxide (229 aa)    
Predicted Functional Partners:
cah
annotation not available
     
 0.832
sulP
Putative transporter; sulP: sulfate permease family protein
 
 
 0.828
DR93_1353
Uncharacterized protein
   
   0.567
DR93_1355
HemR; tonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein
       0.557
polA
Pola: DNA polymerase I
     
 0.502
trxB
Uncharacterized protein; TRX_reduct: thioredoxin-disulfide reductase
 
    0.498
rpoC
rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit
    
 
 0.454
arcB
annotation not available
 
   
 0.450
maeB
annotation not available
     
 0.444
hemE
hemE: uroporphyrinogen decarboxylase
  
  
 0.434
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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