STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
thrSThreonyl-tRNA synthetase; thrS: threonine--tRNA ligase (643 aa)    
Predicted Functional Partners:
pheT
pheT_bact: phenylalanine--tRNA ligase, beta subunit
  
 
 0.940
leuS
Leucyl-tRNA synthetase; leuS_bact: leucine--tRNA ligase
 
 
 0.896
metG
Methionyl-tRNA synthetase; metG: methionine--tRNA ligase
  
 
 0.891
pheS
pheS: phenylalanine--tRNA ligase, alpha subunit; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
  
 
 0.878
serS
Seryl-tRNA synthetase; serS: serine--tRNA ligase
  
 
 0.865
ileS
Isoleucyl-tRNA synthetase; ileS: isoleucine--tRNA ligase
   
 
 0.857
infC
Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
 
  
 0.855
valS
Valyl-tRNA synthetase; valS: valine--tRNA ligase
 
  
 0.852
lysS
Lysyl-tRNA synthetase; lysS_bact: lysine--tRNA ligase
  
 
 0.842
alaS
alaS: alanine--tRNA ligase
  
 
 0.820
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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