STRINGSTRING
rho protein (Pasteurella multocida) - STRING interaction network
"rho" - Rho: transcription termination factor Rho in Pasteurella multocida
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhoRho- transcription termination factor Rho (420 aa)    
Predicted Functional Partners:
nusG
Transcription termination/antitermination protein NusG; Participates in transcription elongation, termination and antitermination (183 aa)
   
 
  0.896
rpoC
rpoC_TIGR- DNA-directed RNA polymerase, beta’ subunit (1417 aa)
   
   
  0.745
polA
Pola- DNA polymerase I (930 aa)
   
   
  0.740
rpsA
rpsA- ribosomal protein S1 (549 aa)
 
   
  0.734
hfq
RNA-binding protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs (96 aa)
     
 
  0.731
rpoB
rpoB- DNA-directed RNA polymerase, beta subunit (1342 aa)
   
 
  0.716
nusB
Transcription antitermination protein NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons (144 aa)
     
   
  0.674
rpoD
rpoD_Cterm- RNA polymerase sigma factor RpoD (622 aa)
 
 
 
  0.670
arcB
annotation not available (618 aa)
         
  0.628
hisB
annotation not available (363 aa)
   
   
  0.623
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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