STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dapDdapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (274 aa)    
Predicted Functional Partners:
dapB
dapB: dihydrodipicolinate reductase
 
 
 0.994
argD
annotation not available
  
 
 0.946
dapA
dapA: dihydrodipicolinate synthase; Belongs to the DapA family
 
  
 0.739
dapE
dapE_proteo: succinyl-diaminopimelate desuccinylase
 
  
 0.733
thrA
Bifunctional aspartokinase I/homoserine dehydrogenase I; Asp_kinase: aspartate kinase domain protein
 
  
 0.673
rplC
50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
  
  
 0.672
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine
 
  
 0.624
DR93_1044
Asp_kin_monofn: aspartate kinase, monofunctional class
 
  
 0.615
DR93_1266
annotation not available
 
  
 0.586
alr
Alr: alanine racemase
  
  
 0.562
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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