STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fnrannotation not available (252 aa)    
Predicted Functional Partners:
DR93_1500
Universal stress protein UspE
  
  
 0.709
pflA
PFLA: pyruvate formate-lyase 1-activating enzyme
      0.701
arcB
annotation not available
   
 
 0.627
DR93_1498
annotation not available
       0.592
rpoD
rpoD_Cterm: RNA polymerase sigma factor RpoD
    
 
 0.580
yhb1
annotation not available
     
 0.538
DR93_2075
2a37: transporter, monovalent cation:proton antiporter-2 family protein
     
 0.497
rpoA
rpoA: DNA-directed RNA polymerase, alpha subunit
   
   0.494
DR93_233
annotation not available
     
 0.492
hpaA
hpaA: 4-hydroxyphenylacetate catabolism regulatory protein HpaA
     
 0.461
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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