fnr protein (Pasteurella multocida) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

fnr

annotation not available (252 aa)

Predicted Functional Partners:

DR93_1500

0.709

pflA

0.701

arcB

0.627

DR93_1498

0.592

rpoD

0.580

yhb1

0.538

DR93_2075

0.497

rpoA

0.494

DR93_233

0.492

hpaA

0.461

Your Current Organism:

Pasteurella multocida

NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR93_1498	DR93_1500	DR93_1498	DR93_1500	annotation not available	Universal stress protein UspE	0.405
DR93_1498	fnr	DR93_1498	DR93_1499	annotation not available	annotation not available	0.592
DR93_1500	DR93_1498	DR93_1500	DR93_1498	Universal stress protein UspE	annotation not available	0.405
DR93_1500	arcB	DR93_1500	DR93_1087	Universal stress protein UspE	annotation not available	0.561
DR93_1500	fnr	DR93_1500	DR93_1499	Universal stress protein UspE	annotation not available	0.709
DR93_2075	DR93_233	DR93_2075	DR93_233	2a37- transporter, monovalent cation-proton antiporter-2 family protein	annotation not available	0.678
DR93_2075	arcB	DR93_2075	DR93_1087	2a37- transporter, monovalent cation-proton antiporter-2 family protein	annotation not available	0.731
DR93_2075	fnr	DR93_2075	DR93_1499	2a37- transporter, monovalent cation-proton antiporter-2 family protein	annotation not available	0.497
DR93_2075	rpoD	DR93_2075	DR93_725	2a37- transporter, monovalent cation-proton antiporter-2 family protein	rpoD_Cterm- RNA polymerase sigma factor RpoD	0.455
DR93_233	DR93_2075	DR93_233	DR93_2075	annotation not available	2a37- transporter, monovalent cation-proton antiporter-2 family protein	0.678
DR93_233	arcB	DR93_233	DR93_1087	annotation not available	annotation not available	0.777
DR93_233	fnr	DR93_233	DR93_1499	annotation not available	annotation not available	0.492
DR93_233	hpaA	DR93_233	DR93_373	annotation not available	hpaA- 4-hydroxyphenylacetate catabolism regulatory protein HpaA	0.621
DR93_233	rpoD	DR93_233	DR93_725	annotation not available	rpoD_Cterm- RNA polymerase sigma factor RpoD	0.599
DR93_233	yhb1	DR93_233	DR93_232	annotation not available	annotation not available	0.517
arcB	DR93_1500	DR93_1087	DR93_1500	annotation not available	Universal stress protein UspE	0.561
arcB	DR93_2075	DR93_1087	DR93_2075	annotation not available	2a37- transporter, monovalent cation-proton antiporter-2 family protein	0.731
arcB	DR93_233	DR93_1087	DR93_233	annotation not available	annotation not available	0.777
arcB	fnr	DR93_1087	DR93_1499	annotation not available	annotation not available	0.627
arcB	hpaA	DR93_1087	DR93_373	annotation not available	hpaA- 4-hydroxyphenylacetate catabolism regulatory protein HpaA	0.713

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