STRINGSTRING
rnd protein (Pasteurella multocida) - STRING interaction network
"rnd" - Rnd: ribonuclease D in Pasteurella multocida
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rndRnd- ribonuclease D (383 aa)    
Predicted Functional Partners:
DR93_1537
annotation not available (562 aa)
 
        0.908
DR93_1538
Slp- outer membrane lipo, Slp family protein (179 aa)
        0.842
ribE
ribE- riboflavin synthase, alpha subunit (204 aa)
 
            0.773
tmcA
annotation not available (651 aa)
     
      0.749
DR93_1316
annotation not available (148 aa)
 
        0.610
DR93_1217
annotation not available (83 aa)
 
          0.599
DR93_233
annotation not available (861 aa)
   
     
  0.596
arcB
annotation not available (618 aa)
     
   
  0.585
ysxC
GTPase_YsxC- ribosome biogenesis GTP-binding protein YsxC (205 aa)
           
  0.573
cysZ
annotation not available (267 aa)
   
     
  0.553
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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