STRINGSTRING
dacB protein (Pasteurella multocida) - STRING interaction network
"dacB" - PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase in Pasteurella multocida
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dacBPBP4- D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase (487 aa)    
Predicted Functional Partners:
dacA
annotation not available (394 aa)
       
  0.902
DR93_1100
annotation not available (680 aa)
   
     
  0.562
greA
annotation not available (158 aa)
              0.558
mrcA
annotation not available (853 aa)
     
 
  0.531
DR93_1930
annotation not available (601 aa)
       
 
  0.501
DR93_1990
annotation not available (188 aa)
           
  0.499
DR93_2002
Beta-hexosaminidase; Glycosyl hydrolase family 3 N terminal domain protein (351 aa)
           
  0.461
parE
parE_Gneg- DNA topoisomerase IV, B subunit (632 aa)
     
   
  0.450
DR93_2034
annotation not available (492 aa)
           
  0.422
gcvA
annotation not available (293 aa)
           
  0.414
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
Server load: low (14%) [HD]