STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nrdRannotation not available (149 aa)    
Predicted Functional Partners:
ribD
eubact_ribD: riboflavin biosynthesis protein RibD
 
 
 0.954
degS
DegS; protease_degS: periplasmic serine peptidase DegS
       0.849
yfbR
5'-deoxynucleotidase; Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates; Belongs to the 5DNU family
       0.796
DR93_1583
annotation not available
       0.591
thiL
thiL: thiamine-monophosphate kinase
  
  
 0.576
nrdD
nrdD: anaerobic ribonucleoside-triphosphate reductase
 
   
 0.552
DR93_1765
Bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase
      
 0.535
argR
argR_whole: arginine repressor
      
 0.455
polA
Pola: DNA polymerase I
  
  
 0.436
ligA
Dnlj: DNA ligase, NAD-dependent
      
 0.426
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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