STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ihfBIntegration host factor subunit beta; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control (94 aa)    
Predicted Functional Partners:
rpsA
rpsA: ribosomal protein S1
 
  
 0.982
cmk
Cmk: cytidylate kinase
   
 0.976
ihfA
himA: integration host factor, alpha subunit; Belongs to the bacterial histone-like protein family
  
 
0.939
serC
3-phosphoserine/phosphohydroxythreonine aminotransferase; serC_1: phosphoserine transaminase
     
 0.748
DR93_1638
annotation not available
       0.711
pyrF
pyrF: orotidine 5'-phosphate decarboxylase
  
  
 0.708
lapA
Probable lipopolysaccharide assembly protein A; Involved in the assembly of lipopolysaccharide (LPS)
       0.670
tyrA
annotation not available
     
 0.592
ygiW
annotation not available
      
 0.580
lsrB
annotation not available
      
 0.579
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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