STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
selBselB: selenocysteine-specific translation elongation factor (624 aa)    
Predicted Functional Partners:
selA
Selenocysteine synthase; selA: L-seryl-tRNA selenium transferase
 
  
 0.920
DR93_1182
FdxG; formate-DH-alph: formate dehydrogenase, alpha subunit
 
   
 0.898
selD
Selenophosphate synthetase; selD: selenide, water dikinase
 
  
 0.867
rpsC
rpsC_bact: ribosomal protein S3
   
 
 0.828
rpsB
rpsB_bact: ribosomal protein S2
   
   0.826
rplR
L18_bact: ribosomal protein L18
   
   0.825
fdhE
fdhE: formate dehydrogenase accessory protein FdhE
 
    0.793
DR93_1183
annotation not available
 
   
 0.785
fdxH
FdxH; FDH-beta: formate dehydrogenase, beta subunit
 
   
 0.766
argS
Arginyl-tRNA synthetase; argS: arginine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family
  
   0.762
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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