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hfq protein (Pasteurella multocida) - STRING interaction network
"hfq" - RNA-binding protein Hfq in Pasteurella multocida
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hfqRNA-binding protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs (96 aa)    
Predicted Functional Partners:
hflX
GTP_HflX- GTP-binding protein HflX (448 aa)
 
   
  0.985
miaA
miaA- tRNA dimethylallyltransferase (316 aa)
 
   
  0.957
hflK
Protein HflK; HflC and HflK could encode or regulate a protease (415 aa)
 
   
  0.858
hflC
hflC- HflC protein (295 aa)
 
   
  0.851
mutL
annotation not available (617 aa)
         
  0.793
pcnB
annotation not available (501 aa)
       
 
  0.762
rho
Rho- transcription termination factor Rho (420 aa)
     
 
  0.731
DR93_1745
annotation not available (409 aa)
 
     
  0.726
arcB
annotation not available (618 aa)
           
  0.644
DR93_1744
Uncharacterized protein; T6A_YjeE- tRNA threonylcarbamoyl adenosine modification protein YjeE (149 aa)
              0.641
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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