STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gltAGltA; cit_synth_I: citrate (Si)-synthase (428 aa)    
Predicted Functional Partners:
acnB
Bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; acnB: aconitate hydratase 2
  
 
 0.987
mdh
MDH_euk_gproteo: malate dehydrogenase, NAD-dependent
  
 0.985
maeB
annotation not available
  
 
 0.972
fumC
fumC_II: fumarate hydratase, class II
   
 0.968
aceF
Pyruvate dehydrogenase dihydrolipoyltransacetylase; PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
  
 0.954
pckA
pckA: phosphoenolpyruvate carboxykinase; Belongs to the phosphoenolpyruvate carboxykinase (ATP) family
  
 
 0.934
sucA
2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component
 
  
 0.930
atpA
atpA: ATP synthase F1, alpha subunit
   
  
 0.895
DR93_1323
annotation not available
   
 
 0.892
accD
accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit
    
 0.887
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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