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smpB protein (Pasteurella multocida) - STRING interaction network
smpB: SsrA-binding protein in Pasteurella multocida
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smpBsmpB- SsrA-binding protein (160 aa)    
Predicted Functional Partners:
rnr
RNase_R- ribonuclease R (800 aa)
   
 
  0.855
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site (116 aa)
 
 
  0.842
rpsB
rpsB_bact- ribosomal protein S2 (240 aa)
   
 
  0.811
dnaG
annotation not available (582 aa)
 
   
  0.808
rpsC
rpsC_bact- ribosomal protein S3 (235 aa)
   
 
  0.805
rplT
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (117 aa)
   
 
  0.782
rpoB
rpoB- DNA-directed RNA polymerase, beta subunit (1342 aa)
   
   
  0.763
polA
Pola- DNA polymerase I (930 aa)
 
     
  0.754
rplM
rplM_bact- ribosomal protein L13 (142 aa)
   
 
  0.741
pheT
pheT_bact- phenylalanine--tRNA ligase, beta subunit (795 aa)
 
 
  0.741
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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