lptF protein (Pasteurella multocida) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

lptF

annotation not available (368 aa)

Predicted Functional Partners:

lptG

0.999

lptB

0.991

lptD

0.751

DR93_1893

0.720

DR93_1871

0.689

yaeT

0.636

lolA

0.625

tolQ

0.555

mreC

0.527

lptA

0.510

Your Current Organism:

Pasteurella multocida

NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR93_1871	lptF	DR93_1871	DR93_1870	Cytosol aminopeptidase family, N-terminal domain protein	annotation not available	0.689
DR93_1871	lptG	DR93_1871	DR93_1869	Cytosol aminopeptidase family, N-terminal domain protein	annotation not available	0.690
DR93_1893	lolA	DR93_1893	DR93_1804	annotation not available	lolA: outer membrane lipocarrier protein LolA	0.474
DR93_1893	lptA	DR93_1893	DR93_1894	annotation not available	outer_YhbN_LptA: lipopolysaccharide transport periplasmic protein LptA	0.989
DR93_1893	lptB	DR93_1893	DR93_1895	annotation not available	annotation not available	0.963
DR93_1893	lptD	DR93_1893	DR93_449	annotation not available	annotation not available	0.812
DR93_1893	lptF	DR93_1893	DR93_1870	annotation not available	annotation not available	0.720
DR93_1893	lptG	DR93_1893	DR93_1869	annotation not available	annotation not available	0.658
lolA	DR93_1893	DR93_1804	DR93_1893	lolA: outer membrane lipocarrier protein LolA	annotation not available	0.474
lolA	lptA	DR93_1804	DR93_1894	lolA: outer membrane lipocarrier protein LolA	outer_YhbN_LptA: lipopolysaccharide transport periplasmic protein LptA	0.565
lolA	lptD	DR93_1804	DR93_449	lolA: outer membrane lipocarrier protein LolA	annotation not available	0.707
lolA	lptF	DR93_1804	DR93_1870	lolA: outer membrane lipocarrier protein LolA	annotation not available	0.625
lolA	lptG	DR93_1804	DR93_1869	lolA: outer membrane lipocarrier protein LolA	annotation not available	0.445
lolA	mreC	DR93_1804	DR93_2142	lolA: outer membrane lipocarrier protein LolA	mreC: rod shape-determining protein MreC	0.501
lolA	yaeT	DR93_1804	DR93_2107	lolA: outer membrane lipocarrier protein LolA	Uncharacterized protein; OM_YaeT: outer membrane assembly complex, YaeT protein	0.778
lptA	DR93_1893	DR93_1894	DR93_1893	outer_YhbN_LptA: lipopolysaccharide transport periplasmic protein LptA	annotation not available	0.989
lptA	lolA	DR93_1894	DR93_1804	outer_YhbN_LptA: lipopolysaccharide transport periplasmic protein LptA	lolA: outer membrane lipocarrier protein LolA	0.565
lptA	lptB	DR93_1894	DR93_1895	outer_YhbN_LptA: lipopolysaccharide transport periplasmic protein LptA	annotation not available	0.958
lptA	lptD	DR93_1894	DR93_449	outer_YhbN_LptA: lipopolysaccharide transport periplasmic protein LptA	annotation not available	0.789
lptA	lptF	DR93_1894	DR93_1870	outer_YhbN_LptA: lipopolysaccharide transport periplasmic protein LptA	annotation not available	0.510

page 1 of 4

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About