STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lptBannotation not available (241 aa)    
Predicted Functional Partners:
lptG
annotation not available
 
 
 0.992
lptF
annotation not available
 
 0.991
DR93_1893
annotation not available
 
 
 0.963
lptA
outer_YhbN_LptA: lipopolysaccharide transport periplasmic protein LptA
 
  
 0.958
ptsN
Uncharacterized protein; nitro_reg_IIA: PTS IIA-like nitrogen-regulatory protein PtsN
 
    0.895
DR93_1897
Uncharacterized protein
 
    0.815
DR93_1891
annotation not available
     0.672
DR93_1892
Uncharacterized protein
 
    
0.633
lpxA
lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase
 
  
 0.629
DR93_1300
kpsF: sugar isomerase, KpsF/GutQ family protein
    0.609
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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