STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DR93_1955Uncharacterized protein; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family (233 aa)    
Predicted Functional Partners:
proC
proC: pyrroline-5-carboxylate reductase
    0.852
mtnN
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH/AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively; Belongs to the PNP/UDP phosphorylase family. MtnN subfamily
 
    0.755
rdgB
annotation not available
 
  
 0.739
rlmN
23S rRNA m2A2503 methyltransferase
  
     0.632
DR93_693
annotation not available
 
    0.527
thrA
Bifunctional aspartokinase I/homoserine dehydrogenase I; Asp_kinase: aspartate kinase domain protein
  
    0.514
pnp
Polynucleotide phosphorylase/polyadenylase; Polynuc_phos: polyribonucleotide nucleotidyltransferase
 
    0.446
DR93_559
Tim: triose-phosphate isomerase
  
    0.429
metG
Methionyl-tRNA synthetase; metG: methionine--tRNA ligase
  
   0.428
DR93_562
annotation not available
  
  
 0.416
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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