STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dnaQdnaQ_proteo: DNA polymerase III, epsilon subunit (253 aa)    
Predicted Functional Partners:
dnaE
annotation not available
 
 0.991
dnaN
Dnan: DNA polymerase III, beta subunit
 
 
 0.986
DR93_1963
annotation not available
  
 0.968
polA
Pola: DNA polymerase I
  
 
 0.913
pyk
Pyruv_kin: pyruvate kinase; Belongs to the pyruvate kinase family
   
 
 0.903
nrdD
nrdD: anaerobic ribonucleoside-triphosphate reductase
  
 
  0.902
ndk
annotation not available
  
 
  0.902
dcd
dCTP_deam: deoxycytidine triphosphate deaminase
     
  0.900
dgt
Deoxyguanosinetriphosphate triphosphohydrolase-like protein; dGTP_triPase: dGTPase family protein
     
  0.900
holA
holA: DNA polymerase III, delta subunit
  
 
 0.886
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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