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xerD protein (Pasteurella multocida) - STRING interaction network
"xerD" - recomb_XerD: tyrosine recombinase XerD in Pasteurella multocida
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerDrecomb_XerD- tyrosine recombinase XerD; Belongs to the ’phage’ integrase family (297 aa)    
Predicted Functional Partners:
DR93_1979
annotation not available (385 aa)
     
      0.856
proC
proC- pyrroline-5-carboxylate reductase (275 aa)
              0.856
DR93_1805
annotation not available (930 aa)
 
 
 
  0.702
recJ
Uncharacterized protein; recJ- single-stranded-DNA-specific exonuclease RecJ (573 aa)
 
   
  0.658
polA
Pola- DNA polymerase I (930 aa)
   
   
  0.630
thrA
Bifunctional aspartokinase I/homoserine dehydrogenase I; Asp_kinase- aspartate kinase domain protein (815 aa)
         
  0.619
guaB
IMP_dehydrog- inosine-5’-monophosphate dehydrogenase (487 aa)
   
   
  0.603
rdgC
Recombination-associated protein RdgC; May be involved in recombination (302 aa)
              0.599
dsbC
DsbC; Thiol-disulfide interchange protein DsbC (227 aa)
 
        0.595
lysS
Lysyl-tRNA synthetase; lysS_bact- lysine--tRNA ligase (501 aa)
          0.574
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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