DR93_1992 protein (Pasteurella multocida) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DR93_1992

annotation not available (264 aa)

Predicted Functional Partners:

rppH

0.876

lgt

0.874

thyA

0.872

DR93_1995

0.803

Your Current Organism:

Pasteurella multocida

NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR93_1992	DR93_1995	DR93_1992	DR93_1995	annotation not available	annotation not available	0.803
DR93_1992	lgt	DR93_1992	DR93_1993	annotation not available	Prolipoprotein diacylglyceryl transferase; Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins	0.874
DR93_1992	rppH	DR93_1992	DR93_1991	annotation not available	annotation not available	0.876
DR93_1992	thyA	DR93_1992	DR93_1994	annotation not available	Thym_sym: thymidylate synthase	0.872
DR93_1995	DR93_1992	DR93_1995	DR93_1992	annotation not available	annotation not available	0.803
DR93_1995	lgt	DR93_1995	DR93_1993	annotation not available	Prolipoprotein diacylglyceryl transferase; Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins	0.822
DR93_1995	rppH	DR93_1995	DR93_1991	annotation not available	annotation not available	0.807
DR93_1995	thyA	DR93_1995	DR93_1994	annotation not available	Thym_sym: thymidylate synthase	0.885
lgt	DR93_1992	DR93_1993	DR93_1992	Prolipoprotein diacylglyceryl transferase; Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins	annotation not available	0.874
lgt	DR93_1995	DR93_1993	DR93_1995	Prolipoprotein diacylglyceryl transferase; Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins	annotation not available	0.822
lgt	rppH	DR93_1993	DR93_1991	Prolipoprotein diacylglyceryl transferase; Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins	annotation not available	0.962
lgt	thyA	DR93_1993	DR93_1994	Prolipoprotein diacylglyceryl transferase; Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins	Thym_sym: thymidylate synthase	0.968
rppH	DR93_1992	DR93_1991	DR93_1992	annotation not available	annotation not available	0.876
rppH	DR93_1995	DR93_1991	DR93_1995	annotation not available	annotation not available	0.807
rppH	lgt	DR93_1991	DR93_1993	annotation not available	Prolipoprotein diacylglyceryl transferase; Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins	0.962
rppH	thyA	DR93_1991	DR93_1994	annotation not available	Thym_sym: thymidylate synthase	0.969
thyA	DR93_1992	DR93_1994	DR93_1992	Thym_sym: thymidylate synthase	annotation not available	0.872
thyA	DR93_1995	DR93_1994	DR93_1995	Thym_sym: thymidylate synthase	annotation not available	0.885
thyA	lgt	DR93_1994	DR93_1993	Thym_sym: thymidylate synthase	Prolipoprotein diacylglyceryl transferase; Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins	0.968
thyA	rppH	DR93_1994	DR93_1991	Thym_sym: thymidylate synthase	annotation not available	0.969

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About