STRINGSTRING
rnc protein (Pasteurella multocida) - STRING interaction network
"rnc" - RNaseIII: ribonuclease III in Pasteurella multocida
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rncRNaseIII- ribonuclease III (225 aa)    
Predicted Functional Partners:
DR93_2013
Era- GTP-binding protein Era (306 aa)
 
   
  0.991
lepB
sigpep_I_bact- signal peptidase I (340 aa)
 
   
  0.926
lepA
lepA- GTP-binding protein LepA (598 aa)
 
  0.920
trmD
tRNA (guanine-N(1)-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs; Belongs to the RNA methyltransferase TrmD family (245 aa)
 
   
  0.744
recO
Reco- DNA repair protein RecO; Belongs to the RecO family (240 aa)
 
   
  0.743
DR93_1446
annotation not available (277 aa)
            0.721
infB
IF-2- translation initiation factor IF-2 (833 aa)
 
   
  0.701
sun
rsmB- ribosomal RNA small subunit methyltransferase B (446 aa)
   
   
  0.683
metG
Methionyl-tRNA synthetase; metG- methionine--tRNA ligase (682 aa)
   
 
  0.656
rpsO
30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome (89 aa)
   
 
  0.634
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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