STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DR93_2051nrfE: cytochrome c-type biogenesis protein CcmF (641 aa)    
Predicted Functional Partners:
DR93_2049
Cytochrome c-type biogenesis protein; Possible subunit of a heme lyase
 
 0.980
DR93_2050
DsbE; Thiol:disulfide interchange protein DsbE
 
  
 0.970
DR93_2070
annotation not available
 
 0.944
DR93_2048
annotation not available
 
 0.941
DR93_2067
annotation not available
 
 0.896
ccmC
ccmC: heme exporter CcmC family protein
  
 0.886
ccmB
ccmB: heme exporter protein CcmB
 
  
 0.845
DR93_2068
DsbE; Thiol:disulfide interchange protein DsbE
 
  
 0.837
DR93_2074
ccmA: heme ABC exporter, ATP-binding protein CcmA
 
  
 0.784
ccmI
CcmH; cytochro_ccmI: cytochrome c-type biogenesis protein CcmI
 
 0.748
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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