STRINGSTRING
upp protein (Pasteurella multocida) - STRING interaction network
"upp" - Upp: uracil phosphoribosyltransferase in Pasteurella multocida
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uppUpp- uracil phosphoribosyltransferase (208 aa)    
Predicted Functional Partners:
udk
Udk- uridine kinase (216 aa)
 
  0.980
DR93_2061
Ncs2- uracil-xanthine permease family protein (417 aa)
   
  0.977
pyrH
pyrH_bact- UMP kinase (242 aa)
   
 
  0.956
codA
annotation not available (418 aa)
   
 
  0.951
pyrF
pyrF- orotidine 5’-phosphate decarboxylase (233 aa)
     
 
  0.947
udp
Uridine-psphlse- uridine phosphorylase; Belongs to the PNP/UDP phosphorylase family (252 aa)
   
 
  0.942
deoD
deoD- purine nucleoside phosphorylase (238 aa)
       
  0.916
yjjG
annotation not available (223 aa)
       
  0.906
ushA
annotation not available (549 aa)
     
 
  0.904
mazG
Nucleoside triphosphate pyrophosphohydrolase; mazG- MazG family protein (266 aa)
       
    0.902
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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