hisS protein (Pasteurella multocida) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

hisS

Histidyl-tRNA synthetase; hisS: histidine--tRNA ligase (423 aa)

Predicted Functional Partners:

DR93_2088

0.980

ispG

0.965

pheT

0.888

engA

0.882

lysS

0.851

valS

0.811

metG

0.807

DR93_2091

0.794

tyrS

0.773

serS

0.754

Your Current Organism:

Pasteurella multocida

NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR93_2088	DR93_2091	DR93_2088	DR93_2091	Uncharacterized protein	annotation not available	0.856
DR93_2088	engA	DR93_2088	DR93_1967	Uncharacterized protein	GTP-binding protein Der; GTPase_EngA: ribosome-associated GTPase EngA	0.814
DR93_2088	hisS	DR93_2088	DR93_2089	Uncharacterized protein	Histidyl-tRNA synthetase; hisS: histidine--tRNA ligase	0.980
DR93_2088	ispG	DR93_2088	DR93_2090	Uncharacterized protein	ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	0.943
DR93_2091	DR93_2088	DR93_2091	DR93_2088	annotation not available	Uncharacterized protein	0.856
DR93_2091	hisS	DR93_2091	DR93_2089	annotation not available	Histidyl-tRNA synthetase; hisS: histidine--tRNA ligase	0.794
DR93_2091	ispG	DR93_2091	DR93_2090	annotation not available	ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	0.887
engA	DR93_2088	DR93_1967	DR93_2088	GTP-binding protein Der; GTPase_EngA: ribosome-associated GTPase EngA	Uncharacterized protein	0.814
engA	hisS	DR93_1967	DR93_2089	GTP-binding protein Der; GTPase_EngA: ribosome-associated GTPase EngA	Histidyl-tRNA synthetase; hisS: histidine--tRNA ligase	0.882
engA	ispG	DR93_1967	DR93_2090	GTP-binding protein Der; GTPase_EngA: ribosome-associated GTPase EngA	ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	0.487
engA	metG	DR93_1967	DR93_1079	GTP-binding protein Der; GTPase_EngA: ribosome-associated GTPase EngA	Methionyl-tRNA synthetase; metG: methionine--tRNA ligase	0.598
engA	pheT	DR93_1967	DR93_1459	GTP-binding protein Der; GTPase_EngA: ribosome-associated GTPase EngA	pheT_bact: phenylalanine--tRNA ligase, beta subunit	0.810
hisS	DR93_2088	DR93_2089	DR93_2088	Histidyl-tRNA synthetase; hisS: histidine--tRNA ligase	Uncharacterized protein	0.980
hisS	DR93_2091	DR93_2089	DR93_2091	Histidyl-tRNA synthetase; hisS: histidine--tRNA ligase	annotation not available	0.794
hisS	engA	DR93_2089	DR93_1967	Histidyl-tRNA synthetase; hisS: histidine--tRNA ligase	GTP-binding protein Der; GTPase_EngA: ribosome-associated GTPase EngA	0.882
hisS	ispG	DR93_2089	DR93_2090	Histidyl-tRNA synthetase; hisS: histidine--tRNA ligase	ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	0.965
hisS	lysS	DR93_2089	DR93_1877	Histidyl-tRNA synthetase; hisS: histidine--tRNA ligase	Lysyl-tRNA synthetase; lysS_bact: lysine--tRNA ligase	0.851
hisS	metG	DR93_2089	DR93_1079	Histidyl-tRNA synthetase; hisS: histidine--tRNA ligase	Methionyl-tRNA synthetase; metG: methionine--tRNA ligase	0.807
hisS	pheT	DR93_2089	DR93_1459	Histidyl-tRNA synthetase; hisS: histidine--tRNA ligase	pheT_bact: phenylalanine--tRNA ligase, beta subunit	0.888
hisS	serS	DR93_2089	DR93_1802	Histidyl-tRNA synthetase; hisS: histidine--tRNA ligase	Seryl-tRNA synthetase; serS: serine--tRNA ligase	0.754

page 1 of 4

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About