STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hisSHistidyl-tRNA synthetase; hisS: histidine--tRNA ligase (423 aa)    
Predicted Functional Partners:
DR93_2088
Uncharacterized protein
 
    0.980
ispG
ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
 
  
 0.965
pheT
pheT_bact: phenylalanine--tRNA ligase, beta subunit
 
  
 0.888
engA
GTP-binding protein Der; GTPase_EngA: ribosome-associated GTPase EngA
    0.882
lysS
Lysyl-tRNA synthetase; lysS_bact: lysine--tRNA ligase
  
 
 0.851
valS
Valyl-tRNA synthetase; valS: valine--tRNA ligase
 
  
 0.811
metG
Methionyl-tRNA synthetase; metG: methionine--tRNA ligase
  
 
 0.807
DR93_2091
annotation not available
  
    0.794
tyrS
tyrS: tyrosine--tRNA ligase
  
  
 0.773
serS
Seryl-tRNA synthetase; serS: serine--tRNA ligase
 
 
 0.754
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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