STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylBUncharacterized protein; xylB: xylulokinase (489 aa)    
Predicted Functional Partners:
xylA
xylose_isom_A: xylose isomerase
 
 
 0.996
araD
araD: L-ribulose-5-phosphate 4-epimerase
 
  
 0.954
DR93_469
Rpe: ribulose-phosphate 3-epimerase
 
 
 0.920
DR93_524
annotation not available
   
 0.916
DR93_224
Uncharacterized protein
    
  0.902
xylF
xylF: D-xylose ABC transporter, D-xylose-binding protein
 
   
 0.682
DR93_221
annotation not available
 
 
 0.526
hslV
ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit
      
 0.517
nhaC
antiport_nhaC: Na+/H+ antiporter NhaC
 
     0.491
galM
Galactose-1-epimerase; galM_Leloir: galactose mutarotase
 
  
 0.479
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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