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rnr protein (Pasteurella multocida) - STRING interaction network
"rnr" - RNase_R: ribonuclease R in Pasteurella multocida
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnrRNase_R- ribonuclease R (800 aa)    
Predicted Functional Partners:
rlmB
annotation not available (245 aa)
   
      0.904
smpB
smpB- SsrA-binding protein (160 aa)
   
 
  0.855
pcnB
annotation not available (501 aa)
 
 
  0.695
sun
rsmB- ribosomal RNA small subunit methyltransferase B (446 aa)
 
      0.663
metG
Methionyl-tRNA synthetase; metG- methionine--tRNA ligase (682 aa)
   
   
  0.655
hfq
RNA-binding protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs (96 aa)
 
 
  0.633
rnc
RNaseIII- ribonuclease III (225 aa)
   
 
  0.609
DR93_923
Endoribonuclease YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3’ terminus of the 16S rRNA (158 aa)
         
  0.578
atpC
ATP_synt_epsi- ATP synthase F1, epsilon subunit (142 aa)
 
     
  0.532
rph
Ribonuclease PH; Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates (238 aa)
     
 
  0.512
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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