STRINGSTRING
rlmB protein (Pasteurella multocida) - STRING interaction network
"rlmB" - annotation not available in Pasteurella multocida
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rlmBannotation not available (245 aa)    
Predicted Functional Partners:
rnr
RNase_R- ribonuclease R (800 aa)
   
      0.904
cysE
cysE- serine O-acetyltransferase (264 aa)
   
   
  0.791
rlmL
annotation not available (719 aa)
   
 
  0.698
rsmI
annotation not available (281 aa)
 
   
  0.614
trmD
tRNA (guanine-N(1)-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs; Belongs to the RNA methyltransferase TrmD family (245 aa)
   
 
  0.610
sun
rsmB- ribosomal RNA small subunit methyltransferase B (446 aa)
   
   
  0.572
rplK
L11_bact- ribosomal protein L11 (142 aa)
 
        0.570
mnmC
annotation not available (672 aa)
   
   
  0.540
rsmH
annotation not available (321 aa)
 
   
  0.540
gidB
gidB- 16S rRNA (guanine(527)-N(7))-methyltransferase GidB (210 aa)
 
   
  0.540
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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