STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DR93_228annotation not available (304 aa)    
Predicted Functional Partners:
DR93_227
annotation not available
  
  0.988
DR93_229
annotation not available
  
  0.979
DR93_1911
ccmA: heme ABC exporter, ATP-binding protein CcmA
  
  0.950
DR93_575
annotation not available
  
  0.946
DR93_576
ccmA: heme ABC exporter, ATP-binding protein CcmA
  
  0.944
rbsB
annotation not available
  
  0.937
DR93_494
RbsA; ccmA: heme ABC exporter, ATP-binding protein CcmA
  
  0.913
DR93_492
annotation not available
    
  0.803
DR93_930
annotation not available
     0.637
xylG
xylG: D-xylose ABC transporter, ATP-binding protein
     0.591
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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