STRINGSTRING
ribB protein (Pasteurella multocida) - STRING interaction network
"ribB" - annotation not available in Pasteurella multocida
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ribBannotation not available (214 aa)    
Predicted Functional Partners:
ribD
eubact_ribD- riboflavin biosynthesis protein RibD (376 aa)
 
  0.999
ribH
6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin (157 aa)
 
  0.999
ribA
annotation not available (219 aa)
 
 
  0.990
ribE
ribE- riboflavin synthase, alpha subunit (204 aa)
 
  0.990
sun
rsmB- ribosomal RNA small subunit methyltransferase B (446 aa)
   
   
  0.634
DR93_1765
Bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; birA_ligase- biotin--[acetyl-CoA-carboxylase] ligase (312 aa)
         
  0.612
ribF
Bifunctional riboflavin kinase/FMN adenylyltransferase; ribF- riboflavin biosynthesis protein RibF (311 aa)
 
   
  0.558
thrA
Bifunctional aspartokinase I/homoserine dehydrogenase I; Asp_kinase- aspartate kinase domain protein (815 aa)
   
   
  0.547
DR93_923
Endoribonuclease YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3’ terminus of the 16S rRNA (158 aa)
   
   
  0.493
infA
infA- translation initiation factor IF-1 (72 aa)
     
   
  0.475
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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