STRINGSTRING
rpoA protein (Pasteurella multocida) - STRING interaction network
rpoA: DNA-directed RNA polymerase, alpha subunit in Pasteurella multocida
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpoArpoA- DNA-directed RNA polymerase, alpha subunit (329 aa)    
Predicted Functional Partners:
rpoB
rpoB- DNA-directed RNA polymerase, beta subunit (1342 aa)
 
  0.999
rpsD
30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit (206 aa)
 
 
  0.999
rpsM
bact_S13- 30S ribosomal protein S13; Belongs to the universal ribosomal protein uS13 family (118 aa)
 
  0.999
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome (129 aa)
 
  0.999
rpoC
rpoC_TIGR- DNA-directed RNA polymerase, beta’ subunit (1417 aa)
 
  0.999
rpsH
annotation not available (130 aa)
 
 
  0.999
rpsC
rpsC_bact- ribosomal protein S3 (235 aa)
 
 
  0.999
rpsE
rpsE_bact- ribosomal protein S5 (166 aa)
 
 
  0.998
rpsS
rpsS_bact- ribosomal protein S19 (91 aa)
 
 
  0.997
rpsG
rpsG_bact- ribosomal protein S7 (156 aa)
 
 
  0.997
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
Server load: low (14%) [HD]