rplD protein (Pasteurella multocida) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

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second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

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Your Input:

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Score

rplD

rplD_bact- 50S ribosomal protein L4 (200 aa)

Predicted Functional Partners:

rpsJ

0.999

rplC

0.999

rplB

0.999

rplW

0.999

rplP

0.999

rplV

0.999

rpsC

0.999

rpsS

0.999

rpsQ

0.999

rpsE

0.998

Your Current Organism:

Pasteurella multocida

NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplB	rplC	DR93_265	DR93_268	rplB_bact- ribosomal protein L2	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit	0.999
rplB	rplD	DR93_265	DR93_267	rplB_bact- ribosomal protein L2	rplD_bact- 50S ribosomal protein L4	0.999
rplB	rplP	DR93_265	DR93_261	rplB_bact- ribosomal protein L2	rplP_bact- ribosomal protein L16	0.999
rplB	rplV	DR93_265	DR93_263	rplB_bact- ribosomal protein L2	50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g., L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome	0.999
rplB	rplW	DR93_265	DR93_266	rplB_bact- ribosomal protein L2	annotation not available	0.999
rplB	rpsC	DR93_265	DR93_262	rplB_bact- ribosomal protein L2	rpsC_bact- ribosomal protein S3	0.999
rplB	rpsE	DR93_265	DR93_251	rplB_bact- ribosomal protein L2	rpsE_bact- ribosomal protein S5	0.999
rplB	rpsJ	DR93_265	DR93_269	rplB_bact- ribosomal protein L2	rpsJ_bact- ribosomal protein S10	0.999
rplB	rpsQ	DR93_265	DR93_259	rplB_bact- ribosomal protein L2	S17_bact- 30S ribosomal protein S17	0.998
rplB	rpsS	DR93_265	DR93_264	rplB_bact- ribosomal protein L2	rpsS_bact- ribosomal protein S19	0.999
rplC	rplB	DR93_268	DR93_265	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit	rplB_bact- ribosomal protein L2	0.999
rplC	rplD	DR93_268	DR93_267	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit	rplD_bact- 50S ribosomal protein L4	0.999
rplC	rplP	DR93_268	DR93_261	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit	rplP_bact- ribosomal protein L16	0.998
rplC	rplV	DR93_268	DR93_263	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit	50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g., L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome	0.999
rplC	rplW	DR93_268	DR93_266	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit	annotation not available	0.999
rplC	rpsC	DR93_268	DR93_262	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit	rpsC_bact- ribosomal protein S3	0.999
rplC	rpsE	DR93_268	DR93_251	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit	rpsE_bact- ribosomal protein S5	0.997
rplC	rpsJ	DR93_268	DR93_269	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit	rpsJ_bact- ribosomal protein S10	0.999
rplC	rpsQ	DR93_268	DR93_259	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit	S17_bact- 30S ribosomal protein S17	0.998
rplC	rpsS	DR93_268	DR93_264	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit	rpsS_bact- ribosomal protein S19	0.999

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