STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mioCannotation not available (147 aa)    
Predicted Functional Partners:
gidA
gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
  
  
 0.790
zapB
annotation not available
       0.665
mukB
annotation not available
      
 0.662
rpoH
rpoH_proteo: alternative sigma factor RpoH
      
 0.544
dnaA
dnaA: chromosomal replication initiator protein DnaA
   
  
 0.530
tpx
Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
   
  
 0.482
asnC
annotation not available
 
  
 0.474
nrdD
nrdD: anaerobic ribonucleoside-triphosphate reductase
     
 0.450
fabR
annotation not available
  
     0.429
glpX
glpX: fructose-1,6-bisphosphatase, class II
       0.415
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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