STRINGSTRING
gidA protein (Pasteurella multocida) - STRING interaction network
gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA in Pasteurella multocida
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gidAgidA- tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA (629 aa)    
Predicted Functional Partners:
gidB
gidB- 16S rRNA (guanine(527)-N(7))-methyltransferase GidB (210 aa)
   
  0.997
trmE
mnmE_trmE_thdF- tRNA modification GTPase TrmE (452 aa)
 
  0.995
trmU
tRNA-specific 2-thiouridylase MnmA; trmU- tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (366 aa)
 
 
  0.804
dnaA
dnaA- chromosomal replication initiator protein DnaA (451 aa)
   
   
  0.798
mioC
annotation not available (147 aa)
   
   
  0.790
atpB
ATP_synt_6_or_A- ATP synthase F0, A subunit (264 aa)
   
   
  0.786
yidC
yidC_nterm- membrane protein insertase, YidC/Oxa1 family, N-terminal domain (541 aa)
   
   
  0.763
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5’-leader sequence from pre-tRNA to produce the mature 5’-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5’-leader sequence and broadening the substrate specificity of the ribozyme (108 aa)
   
   
  0.736
polA
Pola- DNA polymerase I (930 aa)
   
   
  0.716
lepA
lepA- GTP-binding protein LepA (598 aa)
 
   
  0.681
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
Server load: low (16%) [HD]