STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ftsEftsE: cell division ATP-binding protein FtsE (216 aa)    
Predicted Functional Partners:
ftsX
Cell division ABC transporter subunit FtsX; ftsX: putative protein insertion permease FtsX
 
 
 0.988
ftsY
Uncharacterized protein; ftsY: signal recognition particle-docking protein FtsY
 
  
 0.912
ftsZ
ftsZ: cell division protein FtsZ
  
 
 
 0.767
ftsA
ftsA: cell division protein FtsA
     
 0.739
mreC
mreC: rod shape-determining protein MreC
   
  
 0.679
ffh
Ffh: signal recognition particle protein
  
 
 0.648
ksgA
16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; ksgA: dimethyladenosine transferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family
 
  
 0.631
arcB
annotation not available
  
  
 0.624
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
  
    0.615
DR93_728
N(6)-L-threonylcarbamoyladenine synthase; T6A_YgjD: tRNA threonylcarbamoyl adenosine modification protein YgjD
 
    0.555
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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