STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DR93_377hpaG-N-term: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit (224 aa)    
Predicted Functional Partners:
hpcD
annotation not available
 
 0.995
DR93_378
hpaG-C-term: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit
 
  
 
0.985
hpaH
hpaH: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase
 
 
 0.981
hpaD
hpaD_Fe: 3,4-dihydroxyphenylacetate 2,3-dioxygenase
 
  
 0.938
hpaE
hpaE: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
 
 
 0.929
DR93_375
annotation not available
 
     0.857
DR93_376
Uncharacterized protein; dctM: TRAP transporter, DctM subunit
       0.827
DR93_374
annotation not available
 
     0.809
hpaI
hpaI: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
 
  
 0.787
hpaA
hpaA: 4-hydroxyphenylacetate catabolism regulatory protein HpaA
 
   
 0.769
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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