STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DR93_400annotation not available (228 aa)    
Predicted Functional Partners:
dprA
dprA: DNA protecting protein DprA
 
  
 0.918
DR93_1703
Rec2; comEC_Rec2: DNA internalization-related competence protein ComEC/Rec2
 
  
 0.802
comM
annotation not available
 
  
 0.786
nfuA
annotation not available
  
    0.737
DR93_816
Radc: DNA repair RadC family protein
 
    0.677
DR93_399
HAD-SF-IIB: HAD hydrolase, IIB family protein
       0.568
DR93_1477
UPF0102 protein AAUPMC_06957; Belongs to the UPF0102 family
 
    0.531
trmD
tRNA (guanine-N(1)-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs; Belongs to the RNA methyltransferase TrmD family
 
   
 0.522
mutL
annotation not available
  
    0.473
DR93_697
Uncharacterized protein
     
 0.444
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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