STRINGSTRING
def protein (Pasteurella multocida) - STRING interaction network
"def" - Uncharacterized protein in Pasteurella multocida
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
defUncharacterized protein; Pept_deformyl- peptide deformylase (170 aa)    
Predicted Functional Partners:
fmt
Fmt- methionyl-tRNA formyltransferase (317 aa)
 
  0.987
rplT
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (117 aa)
 
 
  0.968
rplI
L9- ribosomal protein L9 (149 aa)
   
 
  0.961
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20 (103 aa)
 
 
  0.953
rplM
rplM_bact- ribosomal protein L13 (142 aa)
 
 
  0.937
rpsP
S16- ribosomal protein S16 (82 aa)
 
      0.935
rpsQ
S17_bact- 30S ribosomal protein S17 (85 aa)
   
      0.934
rplV
50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g., L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (110 aa)
   
      0.933
rpsR
30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit (75 aa)
 
 
      0.931
rpsU
S21p- ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family (71 aa)
     
      0.929
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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