STRINGSTRING
sun protein (Pasteurella multocida) - STRING interaction network
"sun" - rsmB: ribosomal RNA small subunit methyltransferase B in Pasteurella multocida
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sunrsmB- ribosomal RNA small subunit methyltransferase B (446 aa)    
Predicted Functional Partners:
fmt
Fmt- methionyl-tRNA formyltransferase (317 aa)
 
   
  0.994
trkA
annotation not available (458 aa)
   
        0.936
ksgA
16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; ksgA- dimethyladenosine transferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family (288 aa)
 
 
  0.931
truB
truB- tRNA pseudouridine(55) synthase (304 aa)
 
 
  0.898
ribD
eubact_ribD- riboflavin biosynthesis protein RibD (376 aa)
   
   
  0.857
DR93_410
annotation not available (274 aa)
              0.856
rpsA
rpsA- ribosomal protein S1 (549 aa)
   
 
  0.841
rrmJ
rrmJ- ribosomal RNA large subunit methyltransferase J (209 aa)
   
 
  0.841
def
Uncharacterized protein; Pept_deformyl- peptide deformylase (170 aa)
   
 
  0.824
tmcA
annotation not available (651 aa)
   
 
  0.809
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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