STRINGSTRING
ispF protein (Pasteurella multocida) - STRING interaction network
"ispF" - annotation not available in Pasteurella multocida
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ispFannotation not available (158 aa)    
Predicted Functional Partners:
ispD
ispD- 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (238 aa)
   
  0.998
ispE
ispE- 4-(cytidine 5’-diphospho)-2-C-methyl-D-erythritol kinase (295 aa)
 
 
  0.990
ispG
ispG_gcpE- 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (367 aa)
 
 
  0.989
dxr
1-deoxy-D-xylulose-5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP); Belongs to the DXR family (399 aa)
 
 
  0.917
ispH
ispH_lytB- 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (314 aa)
 
   
  0.905
truD
annotation not available (335 aa)
   
        0.894
DR93_456
annotation not available (92 aa)
   
        0.878
dxs
Dxs- 1-deoxy-D-xylulose-5-phosphate synthase (614 aa)
 
   
  0.875
trmD
tRNA (guanine-N(1)-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs; Belongs to the RNA methyltransferase TrmD family (245 aa)
   
      0.840
metK
S-adenosylmethionine synthetase; metK- methionine adenosyltransferase (384 aa)
       
  0.817
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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