STRINGSTRING
lsrB protein (Pasteurella multocida) - STRING interaction network
"lsrB" - annotation not available in Pasteurella multocida
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lsrBannotation not available (338 aa)    
Predicted Functional Partners:
DR93_520
annotation not available (330 aa)
 
  0.998
DR93_519
annotation not available (330 aa)
 
  0.994
DR93_522
Autoinducer 2 aldolase (290 aa)
 
 
  0.993
DR93_518
Autoinducer 2 ABC transporter ATP-binding protein LsrA; ccmA- heme ABC exporter, ATP-binding protein CcmA (505 aa)
 
  0.989
lsrG
annotation not available (104 aa)
 
   
  0.985
lsrK
annotation not available (516 aa)
 
   
  0.962
lsrR
annotation not available (307 aa)
 
   
  0.943
luxS
S-ribosylhomocysteine lyase; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5- dihydroxy-2,3-pentadione (DPD); Belongs to the LuxS family (168 aa)
           
  0.676
DR93_524
annotation not available (231 aa)
   
        0.676
arcB
annotation not available (618 aa)
     
 
  0.638
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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