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trmD protein (Pasteurella multocida) - STRING interaction network
"trmD" - tRNA in Pasteurella multocida
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmDtRNA (guanine-N(1)-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs; Belongs to the RNA methyltransferase TrmD family (245 aa)    
Predicted Functional Partners:
rimM
Ribosome maturation factor RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes (175 aa)
 
   
  0.998
rpsP
S16- ribosomal protein S16 (82 aa)
 
   
  0.991
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site (116 aa)
 
   
  0.970
rpsB
rpsB_bact- ribosomal protein S2 (240 aa)
 
   
  0.940
rpsH
annotation not available (130 aa)
   
   
  0.934
rpoB
rpoB- DNA-directed RNA polymerase, beta subunit (1342 aa)
 
   
  0.926
rpsD
30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit (206 aa)
 
   
  0.923
rpsC
rpsC_bact- ribosomal protein S3 (235 aa)
 
   
  0.919
rpoA
rpoA- DNA-directed RNA polymerase, alpha subunit (329 aa)
 
   
  0.915
rpsE
rpsE_bact- ribosomal protein S5 (166 aa)
   
   
  0.898
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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