STRINGSTRING
trmB protein (Pasteurella multocida) - STRING interaction network
"trmB" - annotation not available in Pasteurella multocida
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmBannotation not available (234 aa)    
Predicted Functional Partners:
sun
rsmB- ribosomal RNA small subunit methyltransferase B (446 aa)
   
 
  0.779
DR93_564
Uncharacterized protein (114 aa)
   
        0.707
waaA
annotation not available (427 aa)
            0.668
ksgA
16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; ksgA- dimethyladenosine transferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family (288 aa)
   
   
  0.661
DR93_1765
Bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; birA_ligase- biotin--[acetyl-CoA-carboxylase] ligase (312 aa)
         
  0.651
mnmC
annotation not available (672 aa)
   
   
  0.635
truB
truB- tRNA pseudouridine(55) synthase (304 aa)
   
   
  0.629
prmC
N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; RF_mod_PrmC- protein-(glutamine-N5) methyltransferase, release factor-specific (298 aa)
 
   
  0.617
hrpA
DEAH_box_HrpA- ATP-dependent helicase HrpA (1303 aa)
   
      0.606
trmA
tRNA (uracil(54)-C(5))-methyltransferase; Dual-specificity methyltransferase that catalyzes the formation of 5-methyluridine at position 54 (m5U54) in all tRNAs, and that of position 341 (m5U341) in tmRNA (transfer-mRNA) (362 aa)
   
   
  0.587
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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