STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pyrEannotation not available (214 aa)    
Predicted Functional Partners:
pyrF
pyrF: orotidine 5'-phosphate decarboxylase
  
 
 0.995
pyrD
pyrD_sub2: dihydroorotate dehydrogenase
  
 
 0.966
rph
Ribonuclease PH; Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
  
 
 0.935
carA
CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit
  
  
 0.922
carB
CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit
  
  
 0.884
prs
annotation not available
   
 
 0.836
guaA
guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain
 
  
 0.823
purL
FGAM_synt: phosphoribosylformylglycinamidine synthase
 
  
 0.775
guaB
IMP_dehydrog: inosine-5'-monophosphate dehydrogenase
  
  
 0.737
yajC
yajC: preprotein translocase, YajC subunit
   
  
 0.721
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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