STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmUtRNA-specific 2-thiouridylase MnmA; trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (366 aa)    
Predicted Functional Partners:
tusE
Uncharacterized protein; dsrC_tusE_dsvC: sulfur relay , TusE/DsrC/DsvC family protein
    
 0.943
nifU
annotation not available
    
 0.842
gidA
gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
 
 
 0.804
hflD
annotation not available
  
    0.801
ribF
Bifunctional riboflavin kinase/FMN adenylyltransferase; ribF: riboflavin biosynthesis protein RibF
 
    0.789
trmE
mnmE_trmE_thdF: tRNA modification GTPase TrmE
 
 
 0.771
metG
Methionyl-tRNA synthetase; metG: methionine--tRNA ligase
  
  
 0.721
DR93_1765
Bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase
     
 0.719
thiI
annotation not available
 
  
 0.712
dusC
tRNA-dihydrouridine(16) synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U16 in tRNAs; Belongs to the dus family
  
  
 0.707
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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