STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpoCrpoC_TIGR: DNA-directed RNA polymerase, beta' subunit (1417 aa)    
Predicted Functional Partners:
rpoA
rpoA: DNA-directed RNA polymerase, alpha subunit
 
 0.999
rpoB
rpoB: DNA-directed RNA polymerase, beta subunit
 0.999
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits
  
 0.994
rpoD
rpoD_Cterm: RNA polymerase sigma factor RpoD
 
 
 0.990
rpsC
rpsC_bact: ribosomal protein S3
 
 
 0.987
rpsE
rpsE_bact: ribosomal protein S5
 
 
 0.983
rpsH
annotation not available
 
 
 0.980
nusG
Transcription termination/antitermination protein NusG; Participates in transcription elongation, termination and antitermination
 
 
 0.979
nusA
annotation not available
 
   0.970
rpsG
rpsG_bact: ribosomal protein S7
 
 
 0.968
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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