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rpoC protein (Pasteurella multocida) - STRING interaction network
rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit in Pasteurella multocida
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpoCrpoC_TIGR- DNA-directed RNA polymerase, beta’ subunit (1417 aa)    
Predicted Functional Partners:
rpoB
rpoB- DNA-directed RNA polymerase, beta subunit (1342 aa)
  0.999
rpoA
rpoA- DNA-directed RNA polymerase, alpha subunit (329 aa)
 
  0.999
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta’ subunit thereby facilitating its interaction with the beta and alpha subunits (89 aa)
   
  0.994
rpoD
rpoD_Cterm- RNA polymerase sigma factor RpoD (622 aa)
 
 
  0.990
rpsC
rpsC_bact- ribosomal protein S3 (235 aa)
 
 
  0.987
rpsE
rpsE_bact- ribosomal protein S5 (166 aa)
 
 
  0.983
rpsH
annotation not available (130 aa)
 
 
  0.980
nusG
Transcription termination/antitermination protein NusG; Participates in transcription elongation, termination and antitermination (183 aa)
 
 
  0.979
nusA
annotation not available (493 aa)
 
      0.970
rpsG
rpsG_bact- ribosomal protein S7 (156 aa)
 
 
  0.968
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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