DR93_624 protein (Pasteurella multocida) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DR93_624

annotation not available (276 aa)

Predicted Functional Partners:

DR93_625

0.999

metN

0.996

ompA

0.667

DR93_779

0.666

sodC

0.663

DR93_1164

0.663

sodA

0.661

exbB

0.580

thiB

0.555

gmhB

0.468

Your Current Organism:

Pasteurella multocida

NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR93_1164	DR93_624	DR93_1164	DR93_624	OmpH; OMP85_target- outer membrane insertion C-terminal signal domain protein	annotation not available	0.663
DR93_1164	DR93_779	DR93_1164	DR93_779	OmpH; OMP85_target- outer membrane insertion C-terminal signal domain protein	tonB_Cterm- TonB family C-terminal domain protein	0.674
DR93_1164	exbB	DR93_1164	DR93_781	OmpH; OMP85_target- outer membrane insertion C-terminal signal domain protein	exbB2- tonB-system energizer ExbB	0.576
DR93_1164	ompA	DR93_1164	DR93_1622	OmpH; OMP85_target- outer membrane insertion C-terminal signal domain protein	annotation not available	0.854
DR93_1164	sodA	DR93_1164	DR93_2085	OmpH; OMP85_target- outer membrane insertion C-terminal signal domain protein	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems	0.663
DR93_1164	sodC	DR93_1164	DR93_2146	OmpH; OMP85_target- outer membrane insertion C-terminal signal domain protein	annotation not available	0.663
DR93_1164	thiB	DR93_1164	DR93_1151	OmpH; OMP85_target- outer membrane insertion C-terminal signal domain protein	TbpA; thiB- thiamin/thiamin pyrophosphate ABC transporter, thiamin/thiamin pyrophospate-binding protein	0.663
DR93_624	DR93_1164	DR93_624	DR93_1164	annotation not available	OmpH; OMP85_target- outer membrane insertion C-terminal signal domain protein	0.663
DR93_624	DR93_625	DR93_624	DR93_625	annotation not available	annotation not available	0.999
DR93_624	DR93_779	DR93_624	DR93_779	annotation not available	tonB_Cterm- TonB family C-terminal domain protein	0.666
DR93_624	exbB	DR93_624	DR93_781	annotation not available	exbB2- tonB-system energizer ExbB	0.580
DR93_624	gmhB	DR93_624	DR93_627	annotation not available	gmhB_yaeD- D,D-heptose 1,7-bisphosphate phosphatase family protein	0.468
DR93_624	metN	DR93_624	DR93_626	annotation not available	ABC_MetN- D-methionine ABC transporter, ATP-binding protein	0.996
DR93_624	ompA	DR93_624	DR93_1622	annotation not available	annotation not available	0.667
DR93_624	sodA	DR93_624	DR93_2085	annotation not available	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems	0.661
DR93_624	sodC	DR93_624	DR93_2146	annotation not available	annotation not available	0.663
DR93_624	thiB	DR93_624	DR93_1151	annotation not available	TbpA; thiB- thiamin/thiamin pyrophosphate ABC transporter, thiamin/thiamin pyrophospate-binding protein	0.555
DR93_625	DR93_624	DR93_625	DR93_624	annotation not available	annotation not available	0.999
DR93_625	gmhB	DR93_625	DR93_627	annotation not available	gmhB_yaeD- D,D-heptose 1,7-bisphosphate phosphatase family protein	0.557
DR93_625	metN	DR93_625	DR93_626	annotation not available	ABC_MetN- D-methionine ABC transporter, ATP-binding protein	0.999

page 1 of 4

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2019

Credits

Access

Info

About