STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DR93_624annotation not available (276 aa)    
Predicted Functional Partners:
DR93_625
annotation not available
 0.999
metN
ABC_MetN: D-methionine ABC transporter, ATP-binding protein
 0.996
ompA
annotation not available
      
 0.667
DR93_779
tonB_Cterm: TonB family C-terminal domain protein
   
  
 0.666
DR93_1164
OmpH; OMP85_target: outer membrane insertion C-terminal signal domain protein
      
 0.663
sodC
annotation not available
      
 0.663
sodA
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems
      
 0.661
exbB
exbB2: tonB-system energizer ExbB
   
  
 0.580
thiB
TbpA; thiB: thiamin/thiamin pyrophosphate ABC transporter, thiamin/thiamin pyrophospate-binding protein
      
 0.555
gmhB
gmhB_yaeD: D,D-heptose 1,7-bisphosphate phosphatase family protein
       0.468
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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