STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rsmERibosomal RNA small subunit methyltransferase E; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit (244 aa)    
Predicted Functional Partners:
DR93_65
annotation not available
 
    0.969
DR93_66
Uncharacterized protein
  
   0.887
sun
rsmB: ribosomal RNA small subunit methyltransferase B
 
 
 0.730
rsmI
annotation not available
 
  
 0.597
recO
Reco: DNA repair protein RecO; Belongs to the RecO family
  
    0.586
rumA
rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
  
  
 0.581
rlmL
annotation not available
 
  
 0.580
DR93_70
RelA; spoT_relA: RelA/SpoT family protein
  
    0.580
trmL
tRNA_yibK_trmL: tRNA (cytidine(34)-2'-O)-methyltransferase
 
  
 0.565
ksgA
16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; ksgA: dimethyladenosine transferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family
 
  
 0.562
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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