STRINGSTRING
holB protein (Pasteurella multocida) - STRING interaction network
holB: DNA polymerase III, delta' subunit in Pasteurella multocida
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
holBholB- DNA polymerase III, delta’ subunit (327 aa)    
Predicted Functional Partners:
holA
holA- DNA polymerase III, delta subunit (359 aa)
 
  0.994
DR93_1020
DNA polymerase III subunit psi; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3’ to 5’ exonuclease activity. The exact function of the psi subunit is unknown (136 aa)
   
  0.990
tmk
DTMP_kinase- thymidylate kinase (209 aa)
 
   
  0.985
dnaN
Dnan- DNA polymerase III, beta subunit (366 aa)
 
  0.982
polA
Pola- DNA polymerase I (930 aa)
   
  0.963
DR93_687
Uncharacterized protein (260 aa)
 
        0.957
holC
annotation not available (142 aa)
     
  0.947
dnaE
annotation not available (1159 aa)
 
  0.928
dcd
dCTP_deam- deoxycytidine triphosphate deaminase (194 aa)
 
 
    0.923
ndk
annotation not available (139 aa)
   
 
    0.905
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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