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rumA protein (Pasteurella multocida) - STRING interaction network
rumA: 23S rRNA in Pasteurella multocida
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rumArumA- 23S rRNA (uracil-5-)-methyltransferase RumA (437 aa)    
Predicted Functional Partners:
DR93_70
RelA; spoT_relA- RelA/SpoT family protein (739 aa)
      0.939
recO
Reco- DNA repair protein RecO; Belongs to the RecO family (240 aa)
   
        0.879
dgkA
annotation not available (118 aa)
     
      0.803
sun
rsmB- ribosomal RNA small subunit methyltransferase B (446 aa)
 
 
  0.689
rimO
annotation not available (446 aa)
 
   
  0.674
rplV
50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g., L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (110 aa)
     
   
  0.664
miaB
(Dimethylallyl)adenosine tRNA methylthiotransferase; miaB-methiolase- tRNA-i(6)A37 thiotransferase enzyme MiaB (474 aa)
   
   
  0.642
maf
Maf- septum formation protein Maf (200 aa)
 
        0.621
rplD
rplD_bact- 50S ribosomal protein L4 (200 aa)
     
   
  0.605
prfC
prfC- peptide chain release factor 3 (526 aa)
     
   
  0.591
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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