rdgB protein (Pasteurella multocida) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

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Textmining

[Homology]

Score

rdgB

annotation not available (202 aa)

Predicted Functional Partners:

guaB

0.996

guaA

0.972

rph

0.926

ndk

0.918

DR93_389

0.905

surE

0.904

hpt

0.903

ushA

0.902

yjjG

0.901

gpt

0.901

Your Current Organism:

Pasteurella multocida

NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR93_389	gpt	DR93_389	DR93_202	Uncharacterized protein; HAD-SF-IA-v3- HAD hydrolase, IA, variant 3 family protein	annotation not available	0.900
DR93_389	guaA	DR93_389	DR93_1768	Uncharacterized protein; HAD-SF-IA-v3- HAD hydrolase, IA, variant 3 family protein	guaA_Nterm- GMP synthase (glutamine-hydrolyzing), N-terminal domain	0.906
DR93_389	guaB	DR93_389	DR93_1766	Uncharacterized protein; HAD-SF-IA-v3- HAD hydrolase, IA, variant 3 family protein	IMP_dehydrog- inosine-5’-monophosphate dehydrogenase	0.906
DR93_389	hpt	DR93_389	DR93_1945	Uncharacterized protein; HAD-SF-IA-v3- HAD hydrolase, IA, variant 3 family protein	HGPRTase- hypoxanthine phosphoribosyltransferase	0.901
DR93_389	rdgB	DR93_389	DR93_696	Uncharacterized protein; HAD-SF-IA-v3- HAD hydrolase, IA, variant 3 family protein	annotation not available	0.905
DR93_389	surE	DR93_389	DR93_461	Uncharacterized protein; HAD-SF-IA-v3- HAD hydrolase, IA, variant 3 family protein	5’(3’)-nucleotidase/polyphosphatase; surE- 5’/3’-nucleotidase SurE	0.805
DR93_389	ushA	DR93_389	DR93_774	Uncharacterized protein; HAD-SF-IA-v3- HAD hydrolase, IA, variant 3 family protein	annotation not available	0.800
DR93_389	yjjG	DR93_389	DR93_54	Uncharacterized protein; HAD-SF-IA-v3- HAD hydrolase, IA, variant 3 family protein	annotation not available	0.814
gpt	DR93_389	DR93_202	DR93_389	annotation not available	Uncharacterized protein; HAD-SF-IA-v3- HAD hydrolase, IA, variant 3 family protein	0.900
gpt	guaA	DR93_202	DR93_1768	annotation not available	guaA_Nterm- GMP synthase (glutamine-hydrolyzing), N-terminal domain	0.927
gpt	guaB	DR93_202	DR93_1766	annotation not available	IMP_dehydrog- inosine-5’-monophosphate dehydrogenase	0.935
gpt	hpt	DR93_202	DR93_1945	annotation not available	HGPRTase- hypoxanthine phosphoribosyltransferase	0.889
gpt	rdgB	DR93_202	DR93_696	annotation not available	annotation not available	0.901
gpt	surE	DR93_202	DR93_461	annotation not available	5’(3’)-nucleotidase/polyphosphatase; surE- 5’/3’-nucleotidase SurE	0.901
gpt	ushA	DR93_202	DR93_774	annotation not available	annotation not available	0.901
gpt	yjjG	DR93_202	DR93_54	annotation not available	annotation not available	0.903
guaA	DR93_389	DR93_1768	DR93_389	guaA_Nterm- GMP synthase (glutamine-hydrolyzing), N-terminal domain	Uncharacterized protein; HAD-SF-IA-v3- HAD hydrolase, IA, variant 3 family protein	0.906
guaA	gpt	DR93_1768	DR93_202	guaA_Nterm- GMP synthase (glutamine-hydrolyzing), N-terminal domain	annotation not available	0.927
guaA	guaB	DR93_1768	DR93_1766	guaA_Nterm- GMP synthase (glutamine-hydrolyzing), N-terminal domain	IMP_dehydrog- inosine-5’-monophosphate dehydrogenase	0.999
guaA	hpt	DR93_1768	DR93_1945	guaA_Nterm- GMP synthase (glutamine-hydrolyzing), N-terminal domain	HGPRTase- hypoxanthine phosphoribosyltransferase	0.974

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